Stack Exchange — bioinformatics.stackexchange.com
The content of bioinformatics.stackexchange.com (https://bioinformatics.stackexchange.com/), a Stack Exchange question-and-answer site, as published in the Stack Exchange Data Dump of April 2024 on the Internet Archive. The posts table holds 34,111 rows: 14,106 posts (6,093 questions, 7,551 answers, 226 tag wiki excerpts, 226 tag wikis, 6 posts of type 6 and 4 posts of type 7) and 20,005 comments, written between 16 May 2017 and 31 March 2024. Beside it are 14,791 user accounts, 42,878 votes, 20,242 badges awarded, 536 tags, 46,084 post revisions and 508 links between posts. Every answer keeps the question it answers and every comment the post it was written on, so the threads can be rebuilt. The Internet Archive item describes the dump as anonymised; the votes table names the voter in only 68 rows.
Cite this dataset at
stackexchange-bioinformatics.echo.directory
Analytics
The full graph has 2,673 nodes; this view shows the 1,000-node sample the pipeline drew for display. Node size is centrality, colour is community.
Topic 0
Topic 1
Topic 2
Topic 3
Topic 4
Topic 5
Topic 6
Topic 7
Topic 8
Topic 9
Topic 10
Topic 11
Show all 29 topics
Topic 12
Topic 13
Topic 14
Topic 15
Topic 16
Topic 17
Topic 18
Topic 19
Topic 20
Topic 21
Topic 22
Topic 23
Topic 24
Topic 25
Topic 26
Topic 27
Topic 28
Computed over the full corpus.
Record
- Catalog key
stackexchange-bioinformatics-stackexchange-com- Authors
- Stack Exchange, Inc.
- Year
- 2024
- Source paper
- Stack Exchange Data Dump
- License
- CC BY-SA 3.0 / 4.0 (by contribution date) (CC-BY-SA-3.0 AND CC-BY-SA-4.0)
- Records
- 40,074
- Nodes
- 2,673
- Edges
- 5,559 (directed)
- Nodes are
- user (Stack Exchange account)
- Edges are
- answer collaboration (A answered B's question)
- Attributes
- nodes have attributes; edges have attributes
- Text corpus
- question titles, post bodies, comment text, tag names
- Languages
- en
- Collected
- 2017/2024 (2010s, 2020s)
- Tasks
- From the graph: link prediction, community detection
- Region
- Global (inferred: the platform is used worldwide)
Provenance
- Originally published at
- https://archive.org/details/stackexchange link checked
- Original files as received
- The source files, unconverted, kept for reference: mirrored on echo.directory on 2026-10-09, 16.7 MB across 1 files. Checksums in MANIFEST.json. For use, start with the data package below.
- Data package
- Version 1.0.0 of this dataset as an ECHO Data Package: posts (34,111 rows), users (14,791 rows), x_votes (42,878 rows), x_badges (20,242 rows), x_tags (536 rows), x_post_history (46,084 rows), x_post_links (508 rows).
- Structure
- Temporal (timestamped), Node attributes, Text, Threaded conversations
How to cite
BibTeX
@misc{echo2026,
title = {ECHO: Exploratory Compendium of Humanity Online},
author = {Switzer, Braden and Zafarani, Reza},
year = {2026},
url = {https://echo.directory},
note = {Syracuse University}
}
@misc{stackexchange_2024,
title = {Stack Exchange Data Dump},
author = {{Stack Exchange, Inc.}},
year = {2024},
month = {apr},
publisher = {Internet Archive},
url = {https://archive.org/details/stackexchange}
} APA
Switzer, B., & Zafarani, R. (2026). ECHO: Exploratory Compendium of Humanity Online [Data repository]. Syracuse University. https://echo.directory
Stack Exchange, Inc. (2024). Stack Exchange — bioinformatics.stackexchange.com [Data set]. https://stackexchange-bioinformatics.echo.directory/
MLA
Switzer, Braden, and Reza Zafarani. ECHO: Exploratory Compendium of Humanity Online. Syracuse University, 2026, echo.directory.
Stack Exchange, Inc. Stack Exchange — bioinformatics.stackexchange.com. 2024, stackexchange-bioinformatics.echo.directory/.